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Workflow demos · Pharma and biotech

Cell image quantification

Segments and counts nuclei in nuclear-stain fluorescence images and produces group means and SDs, outline images, a comparison chart and a results workbook.

Try it with your own dataHarnesses
Real product screen
Nucleus outlines drawn over the originals
01

Task overview

Runtimescikit-image 0.25.2
Completion checksCheck script · 1 Excel · 2 PNG
02

Input

Sample data

Attachments

8 microscopy images

Request

Compare cell counts and fluorescence intensity by treatment group against the SOP.

Company data to connect

Experiment results

03

Processing steps

  1. Analysis SOP: segmentation, counts, thresholds
04

Output

Result files

cell_counts.xlsxoutlines_contact_sheet.pnggroup_comparison.png

Completion check items

  • Every image has a row in the results
  • Group means and SDs recomputed
  • 1 Excel · 2 PNG
05

Sample run

Start from a harness templateStart by copying a domain's instructions, skills and completion checks, then connect your company's data to the resources the template recommends.

Cell image quantificationSample run
8 microscopy images

Compare cell counts and fluorescence intensity by treatment group against the SOP.

Completion checks
Result files

A sample screen. Real steps and times depend on the model and the files.

06

Sample data

All file names and figures are sample data.

Sample data

Results by group

GroupImagesMean nucleiSD
Control4312.418.1
Treated 10 µM4204.722.6
All8258.6—

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your own documents

In a consultation, we connect a few of your documents so you can check the answer quality for yourself. Send us your questions and our team will get back to you.

Try it with your own dataAll workflow demos
Product videosReal product screens · Example company ACME Logistics · 16 videos